Till Richter

Ph.D. researcher in self-supervised learning for cell biology · TUM · Helmholtz Munich

Till_lab_min.jpg

Till Richter

Ph.D. Candidate, Machine Learning

TUM · Helmholtz Munich

MUDS · MCML · MDSI

I am Till Richter, a MUDS Ph.D. researcher at the Technical University of Munich (TUM) and Helmholtz Munich, advised by Fabian Theis, Niki Kilbertus, and Yoshua Bengio. I am also a member of the Munich Center for Machine Learning (MCML) and the Munich Data Science Institute (MDSI), and I collaborate with the Causal Cell Dynamics Lab (Helmholtz Munich · MILA Montreal). In 2025 I was a research intern at Microsoft Research in Cambridge, MA, working with Lorin Crawford on multimodal cell foundation models.

What I work on — self-supervised learning as a design principle for biology

Biological systems are multimodal, multiscale, and dynamic, and most of their structure is conditional rather than marginal: which genes are co-regulated, how morphology constrains transcription, how a cell state evolves into the next. Traditional unsupervised methods optimize the marginal likelihood of the data and end up allocating capacity to whatever dominates variance — often library size, batch, or donor — rather than to the conditional dependencies that define biological mechanism.

My research argues for a shift from describing the data distribution to predicting within it: structured self-supervised learning (SSL) as a unifying inductive bias for cellular biology. Concretely, I build models across three increasingly complex scales:

  • Static representations. Masked-prediction SSL learns transcriptomic representations that transfer across donors, tissues, and technologies because the objective forces the model to encode gene–gene regulatory dependencies rather than technical correlations (Nature Machine Intelligence, 2024).
  • Compositional multimodal models. Paired multimodal data is orders of magnitude scarcer than unimodal atlases. I work on compositional foundation models that fuse frozen unimodal experts through learned interfaces (Cell Systems, 2026), and show theoretically and empirically that standard alignment objectives collapse to linear redundancy — motivating synergy-aware integration measured with the Synergistic Information Score (SIS) (preprint, 2026).
  • Cellular dynamics. I extend self-supervision into time with hybrid symbolic-neural models and flow matching, where orthogonality and sparsity constraints recover identifiable, mechanistically meaningful vector fields from snapshot data (Communications Biology, 2026).

Together, these projects target a single thesis: representations that capture predictive structure transfer; representations that merely compress distributional structure do not. This is the foundation I am building toward predictive, in silico models of the cell.

Beyond research

I co-organize the Learning Meaningful Representations of Life (LMRL) workshop at ICLR (2025 Singapore, 2026 Rio de Janeiro), and I have co-organized the Explainable ML in Bioinformatics workshop at ECCB. At TUM I teach the Statistical Learning master’s course (SS24, WS25) and organize the Deep Learning Seminar (since WS24, currently SS26). I mentor interns, working students, and thesis students at Helmholtz Munich. Through the Manage&More scholarship at UnternehmerTUM I work on innovation projects at the intersection of AI and industry, and I volunteer with KI macht Schule! to teach AI in high schools.

Feel free to reach out about research, collaborations, or PhD/internship questions — you can find my email and socials below.

news

Apr 27, 2026 :globe_with_meridians: The Learning Meaningful Representations of Life (LMRL) Workshop at ICLR 2026 in Rio de Janeiro was a fantastic day! Thank you to all speakers, panelists, authors, and attendees for the discussions on world models, foundation models, and synergistic multimodal representations of biology. Link
Mar 02, 2026 :page_facing_up: New preprint from my Microsoft Research internship: Beyond alignment: synergistic integration is required for multimodal cell foundation models. We introduce the Synergistic Information Score (SIS) and show that alignment-based fusion collapses to linear redundancy, motivating synergy-aware integration objectives. Link
Feb 27, 2026 :page_facing_up: Our review Generative models of cell dynamics: from Neural ODEs to flow matching is published in Communications Biology! A unified perspective on continuous-time generative models for single-cell trajectories. Link
Feb 18, 2026 :page_facing_up: Our perspective From modality-specific to compositional foundation models for cell biology is out in Cell Systems! We argue for compositional foundation models (CFMs) that fuse pre-trained unimodal experts as a scalable path toward virtual cell models. Link
Dec 15, 2025 :globe_with_meridians: Excited that the Learning Meaningful Representations of Life (LMRL) Workshop I co-organize has been accepted at ICLR 2026 in Rio de Janeiro, Brazil! Looking forward to another edition of the workshop on representation learning for biology. Link
Nov 28, 2025 :page_facing_up: New preprint: Language may be all omics needs: Harmonizing multimodal data for omics understanding with CellHermes, our self-supervised LLM-based framework that unifies multimodal omics through natural language. Congrats to Yicheng for leading this work. Link
Aug 01, 2025 :rocket: My research internship at Microsoft Research in Cambridge, MA, with Lorin Crawford and the AI for Biomedicine team has come to an end. A huge thank you to the team for an amazing summer working on synergistic multimodal foundation models for cell biology!
May 12, 2025 :rocket: Today marks the beginning of my research internship at Microsoft Research in Cambridge, MA! I’m excited to work with Lorin Crawford and the team on cutting-edge research projects.
Apr 28, 2025 :page_facing_up: Our paper Interpretable Self-Supervised Prototype Learning for Single-Cell Transcriptomics was presented at the LMRL Workshop at ICLR 2025! The work introduces scProto, a novel method that learns interpretable prototypes for denoising single-cell data while preserving biological structure and removing batch effects. Link
Apr 28, 2025 :globe_with_meridians: The Learning Meaningful Representations of Life (LMRL) Workshop I co-organized at ICLR 2025 in Singapore was a great success! The workshop brought together researchers working on foundation models for biological data, multimodal representation learning, and multiscale biological representations, featuring exciting keynotes from leaders in the field and stimulating discussions about the future of AI in biology.
Jan 22, 2025 :page_facing_up: CFGen: Generating Multi-Modal and Multi-Attribute Single-Cell Counts has been accepted at ICLR 2025! Link
Dec 27, 2024 :page_facing_up: Our paper Delineating the Effective Use of Self-Supervised Learning in Single-Cell Genomics is now published in Nature Machine Intelligence! Link
Dec 25, 2024 :rocket: Excited to share that I will be joining Microsoft Research in Cambridge, MA, working with Lorin Crawford as a research intern from May to August 2025!
Dec 10, 2024 :page_facing_up: Our collaborative paper Heterogeneity-driven phenotypic plasticity and treatment response in branched-organoid models of pancreatic ductal adenocarcinoma has been published in Nature Biomedical Engineering! Link
Dec 03, 2024 :globe_with_meridians: The Learning Meaningful Representations of Life (LMRL) Workshop I co-organize got accepted at ICLR 2025! Link

selected publications

  1. Learning Meaningful Representations of Life (LMRL) Workshop @ ICLR 2026
    Kristina Ulicna, Rebecca Boiarsky, Jason Hartford, and 5 more authors
    In ICLR 2026 Workshop Proposals, 2026
  2. Beyond alignment: synergistic integration is required for multimodal cell foundation models
    Till Richter, Eric Zimmermann, James Hall, and 5 more authors
    bioRxiv, 2026
  3. Generative models of cell dynamics: from Neural ODEs to flow matching
    Till Richter, Weixu Wang, Alessandro Palma, and 1 more author
    Communications Biology, 2026
  4. From modality-specific to compositional foundation models for cell biology
    Mojtaba Bahrami, Till Richter, Niklas A Schmacke, and 2 more authors
    Cell Systems, 2026
  5. Delineating the effective use of self-supervised learning in single-cell genomics
    Till Richter, Mojtaba Bahrami, Yufan Xia, and 2 more authors
    Nature Machine Intelligence, 2024
  6. Generating Multi-Modal and Multi-Attribute Single-Cell Counts with CFGen
    Alessandro Palma, Till Richter, Hanyi Zhang, and 4 more authors
    International Conference on Learning Representations (ICLR), 2025